Publications

Plant Biochemistry | Weber | Linka | Eisenhut

• Stiehler F, Steinborn M, Scholz S, Dey D, Weber APM, Denton AK (2020) Helixer: Cross-species gene annotation of large eukaryotic genomes using deep learning. Bioinformatics btaa1044. doi: 10.1093/bioinformatics/btaa1044
• Schmidt SB, Eisenhut M, Schneider A (2020) Chloroplast transition metal regulation for efficient photosynthesis. Trends Plant Sci 25:817-828. doi.org/10.1016/j.tplants.2020.03.003 
• Roell M-S, Zurbriggen MD (2020) The impact of synthetic biology for future agriculture and nutrition. Current opinion in Biotechnology 61: 102-109.
• Eisenhut M (2020) Manganese Homeostasis in Cyanobacteria. Plants 9(1): 18
• Schlüter U, Weber APM (2020) Regulation and Evolution of C₄ Photosynthesis. Annu Rev Plant Biol. 2020 Mar 4. doi: 10.1146/annurev-arplant-042916-040915. [Epub ahead of print]
• Baune MC, Lansing H, Fischer K, Meyer T, Charton L, Linka N, von Schaewen A. (2020) The Arabidopsis Plastidial Glucose-6-phosphate Transporter GPT1 is Dually Targeted to Peroxisomes via the Endoplasmic Reticulum. Plant Cell. pii: tpc.00959.2019. doi: 10.1105/tpc.19.00959..
• Kim YI, Nam IK, Lee DK, Bhandari S, Charton L, Kwak S, Lim JY, Hong K, Kim SJ, Lee JN, Kwon SW, So HS, Linka N, Park R, Choe SK. (2020) Slc25a17 acts as a peroxisomal coenzyme A transporter and regulates multiorgan development in zebrafish. J Cell Physiol 235(1): 151-165. doi: 10.1002/jcp.28954.
• Feitosa-Araujo E, Chaves IS, Florian A, da Fonseca-Pereira P, Apfata JAC, Heyneke E, Medeiros DB, Pires MV, Mettler-Altmann T, Neuhaus HE, Palmieri F, Araújo WL, Obata T, Weber APM, Linka N, Fernie AR, Nunes-Nesi A. (2020) Down-regulation of a Mitochondrial NAD⁺ Transporter (NDT2) Alters Seed Production and Germination in Arabidopsis. Plant Cell Physiol. pii: pcaa017. doi: 10.1093/pcp/pcaa017.

• Kuhnert F, Stefanski A, Overbeck N, Drews L, Reichert AS, Stühler K, Weber APM (2019) Rapid single-step affinity purification of HA-tagged plant mitochondria. Plant Physiol, in press (https://doi.org/10.1104/pp.19.00732).
• Truse R, Grewe S, Herminghaus A, Schulz J, Weber APM, Mettler-Altmann T, Bauer I, Picker O, Vollmer C (2019) Exogenous vasopressin dose-dependently modulates gastric microcirculatory oxygenation in dogs via V1A receptor. Critical Care 23 (1), 35
• Truse R, Smyk M, Schulz J, Herminghaus A, Weber APM, Mettler-Altmann T, Bauer I, Picker O, Vollmer C (2019) Regional hypothermia improves gastric microcirculatory oxygenation during hemorrhage in dogs. PLoS One, 14(12): e0226146
• Su-Hyeon Shim S-H, Lee S-K, Lee D-W, Brilhaus D, Weber APM, Jeon J-S (2019) Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator1 Impairs Photorespiration and Plant Growth. Frontiers Plant Sci, in press. 
• Shanmugarajah K, Linka N, Gräfe K, Smits SHJ, Weber APM, Zeier J, Schmitt L (2019) ABCG1 contributes to suberin formation in Arabidopsis thaliana roots. Sci Rep, 9 (1), 1-12.
• de Souza Chaves I, Araújo EF, Florian A, Medeiros DB, da Fonseca-Pereira P, Charton L, Heyneke E, Apfata JAC, Pires MV, Mettler-Altmann T, Araújo WL, Neuhaus HE, Palmieri F, Obata T, Weber APM, Linka N, Fernie AR, Nunes-Nesi A (2019) Mitochondrial NAD+ transporter (NDT1) plays important roles in cellular NAD+ homeostasis in Arabidopsis thaliana. Plant J, doi: 10.1111/tpj.14452.
• Rossoni AW, Price DC, Seger M, Lyska D, Lammers P, Bhattacharya D, Weber APM (2019) The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions. eLife 2019;8:e45017 DOI: 10.7554/eLife.45017
• R Truse, F Voß, A Herminghaus, J Schulz, A Weber, T Mettler-Altmann, Bauer I, Picker O, Vollmer C (2019) Local gastric RAAS-inhibition improves gastric microvascular perfusion in dogs. J Endocrinol 241(3): 235–247.
• Rossoni AW, Weber APM (2019) Systems Biology of Cold Adaptation in the Polyextremophilic Red Alga Galdieria sulphuraria. Front Microbiol 10:927. 
• Maleckova E, Brilhaus D, Wrobel TJ, Weber APM (2019) Transcript and Metabolite Changes during the Early Phase of ABA-mediated Induction of CAM in Talinum triangulare. J Exp Bot pii: erz189. doi: 10.1093/jxb/erz189.
• Price DC, Goodenough UW, Roth R, Lee JH, Kariyawasam T, Mutwil M, Ferrari C, Facchinelli F, Ball SG, Cenci U, Chan CX, Wagner NE, Yoon HS, Weber APM, Bhattacharya D (2019) Analysis of an improved Cyanophora paradoxa genome assembly. DNA Res pii: dsz009. doi: 10.1093/dnares/dsz009
• Eisenhut M, Roell MS, Weber APM (2019) Mechanistic understanding of photorespiration paves the way to a new green revolution. New Phytol doi: 10.1111/nph.15872
• Bouzid M, He F, Schmitz G, Häusler RE, Weber APM, Mettler-Altmann T, De Meaux J (2019) Arabidopsis species deploy distinct strategies to cope with drought stress. Ann Bot, doi: 10.1093/aob/mcy237
• Strenkert S, Schmollinger S, Gallaher SD, Salomé PA, Purvine SO, Nicora CD, Mettler-Altmann T, Soubeyrand E, Weber APM, Lipton MS, Basset GJ, Merchant SS (2019) Multiomics resolution of molecular events during a day in the life of Chlamydomonas. Proc Natl Acad Sci USA 116(6): 2374-2383.
• Weber APM, Bar-Even A (2019) Synthetic biology to improve carbon assimilation. Plant Physiol  179(3):803-812;
• Eisenhut M, Weber APM (2019) Improving crop yield. Science 363(6422): 32-33
• Rossoni AW, Schönknecht G, Lee HJ, Rupp RL, Flachbart S, Mettler-Altmann T, Weber APM, Eisenhut M (2019) Cold Acclimation of the Thermoacidophilic Red Alga Galdieria sulphuraria - Changes in Gene Expression and Involvement of Horizontally Acquired Genes. Plant Cell Physiol 60(3):702-712. 
• Staiger D, Weber APM (2019) Molecular mechanisms of plant acclimation to changing environments. Plant Biol 21 Suppl 1:3-5
• Schlüter U, Bräutigam A, Droz JM, Schwender J, Weber APM (2019) The role of alanine and aspartate aminotransferases in C₄ photosynthesis. Plant Biol 21 Suppl 1: 64-76.
• Levey M, Timm S, Mettler-Altmann T, Borghi GL, Koczor M, Arrivault S, Weber APM, Bauwe H, Gowik U, Westhoff P (2019) Efficient 2-phosphoglycolate degradation is required to maintain carbon assimilation and allocation in the C₄ plant Flaveria bidentis. J Exp Bot 70(2): 575–587.

• Samuilov S, Rademacher N, Brilhaus D, Flachbart S, Arab L, Kopriva S, Weber APM, Mettler-Altmann T and Rennenberg H (2018) Knock-Down of the Phosphoserine Phosphatase Gene Effects Rather N- Than S-Metabolism in Arabidopsis thaliana. Front. Plant Sci. 9:1830. doi: 10.3389/fpls.2018.01830
• Samuilov S, Rademacher N, Brilhaus D, Flachbart S, Arab L, Kopriva S, Weber APM, Mettler-Altmann T, Rennenberg H (2018) The photorespiratory BOU gene mutation alters sulfur assimilation and its crosstalk with carbon and nitrogen metabolism in Arabidopsis thaliana. Frontiers Plant Sci 9:1709. doi: 10.3389/fpls.2018.01709
• Fonseca-Pereira P, Neri-Silva R, Cavalcanti JHF, Brito SB, Weber APM, Araújo W, Nunes-Nesi A (2018) Data-Mining Bioinformatics: Connecting Adenylate Transport and Metabolic Responses to Stress. Trends Plant Sci 23(11):961-974.
• Dittberner H, Korte A, Mettler-Altmann T, Weber APM, Monroe G, de Meaux J (2018) Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana. Mol Ecol 27(20):4052-4065
• Bhattacharya D, Qiu H. Lee JM, Yoon HS, Weber APM, Price DC (2018) When Less is More: Red Algae as Models for Studying Gene Loss and Genome Evolution in Eukaryotes. Crit Rev Plant Sci 37: 81-99. 
• Eisenhut M, Hoecker N, Birkelund-Schmidt S, Basgaran RM, Flachbart S, Jahns P, Eser T, Geimer S, Husted S, Weber APM, Leister D, Schneider A (2018) The plastid envelope CHLOROPLAST MANGANESE TRANSPORTER1 is essential for manganese homeostasis in Arabidopsis. Mol Plant 11(7):955-969.
• Lee JM, Yang EC, Graf L, Yang JH, Qi H, Zel Zion U, Chan XC, Stephens TG, Weber APM, Boo GH, Boo SM, Kim KM, Shin Y, Jung M, Lee SJ, Yim HS, Lee JH, Bhattacharya D, Yoon HS (2018) Analysis of the draft genome of the red seaweed Gracilariopsis chorda provides insights into genome size evolution in Rhodophyta. Mol Biol Evol 18(1):41. 
• Qiu H, Rossoni A, Weber APM, Yoon HS, Bhattacharya D (2018) Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria. BMC Evol Biol 18: 41.
• Nowack ECM, Weber APM (2018) Genomics-Informed Insights into Endosymbiotic Organelle Evolution in Photosynthetic Eukaryotes. Annu Rev Plant Biol 69: 51-84.
• Hahn F, Eisenhut M, Mantegazza O, Weber APM (2018) Homology-directed repair of a defective glabrous gene in Arabidopsis with Cas9-based gene targeting. Front Plant Sci 9:424.
• Monné M, Daddabbo L, Gagneul D, Obata T, Hielscher B, Palmieri L, Miniero DV, Fernie AR, Weber APM, Palmieri F. (2018) Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate and dicarboxylates. J Biol Chem 293 (11): 4213-4227.
• Slattery RA, Walker BJ, Weber APM, Ort DR. (2018) The impacts of fluctuating light on crop performance. Plant Physiol 176(2): 990-1003.
• Dijkhuizen LW, Brouwer P, Bolhuis H, Reichart GJ, Koppers N, Huettel B, Bolger AM, Li FW, Cheng S, Liu X, Wong GK, Pryer K, Weber A, Bräutigam A, Schluepmann H. (2018) Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N₂ but may denitrify. New Phytol 202(3): 1069-1082.

• Fischer K, Weber APM (2017) Sometime a rocker-switch motion. Nat Plants 3(10):771-772.
• Roell MS, Kuhnert F, Zamani-Nour S, Weber APM (2017) In Vitro Analysis of Metabolite Transport Proteins. Methods Mol Biol 1653: 83-96.
• König S, Eisenhut M, Bräutigam A, Kurz S, Weber APM, Büchel C (2017) The Influence of a Cryptochrome on the Gene Expression Profile in the Diatom Phaeodactylum tricornutum under Blue Light and in Darkness. Plant Cell Physiol 58(11): 1914-1923.
• Truse R, Hinterberg J, Schulz J, Herminghaus A, Weber APM, Mettler-Altmann T, Bauer I, Picker O, Vollmer C (2017) Effect of Topical Iloprost and Nitroglycerin on Gastric Microcirculation and Barrier Function during Hemorrhagic Shock in Dogs. J Vasc Res, 54(2): 109-121.
• Rademacher N, Wrobel TJ, Rossoni AW, Kurz S, Bräutigam A, Weber APM, Eisenhut M (2017) Transcriptional response of the extremophile red alga Cyanidioschyzon merolae to changes in CO₂ concentrations. J Plant Physiol 217: 49-56.
• Hahn F, Eisenhut M, Mantegazza O, Weber APM (2017) Generation of Targeted Knockout Mutants in Arabidopsis thaliana Using CRISPR/Cas9. Bio-protocol 7: e2384; DOI:10.21769/BioProtoc.2384.
• Mikulski P, Komarynets O, Facchinelli F, Weber APM, Schubert D (2017) Characterization of the Polycomb-Group Mark H3K27me3 in Unicellular Algae. Front Plant Sci 8: 607.
• Heckmann D, Schlüter U, Weber APM (2017) Machine learning techniques for predicting crop photosynthetic capacity from leaf reflectance spectra. Mol Plant, 10(6): 878-890. 
• Brouwer P, Bräutigam A, Buijs VA, Tazelaar AO, van der Werf A, Schlüter U, Reichart GJ, Bolger A, Usadel B, Weber APM, Schluepmann H (2017) Metabolic Adaptation, a Specialized Leaf Organ Structure and Vascular Responses to Diurnal N₂ Fixation by Nostoc azollae Sustain the Astonishing Productivity of Azolla Ferns without Nitrogen Fertilizer. Front Plant Sci 31;8:442. doi: 10.3389/fpls.2017.00442.
• Brandenburg F, Schoffman H, Kurz S, Kraemer U, Keren N, Weber APM, Eisenhut M (2017) The Synechocystis MANGANESE EXPORTER Mnx is essential for manganese homeostasis in cyanobacteria. Plant Physiol 173(3):1798-1810.
• Hahn F, Mantegazza O, Greiner A, Hegemann P, Eisenhut M, Weber APM (2017) An efficient visual screen for CRISPR/Cas9 activity in Arabidopsis thaliana. Frontiers Plant Sci, 8:39. doi: 10.3389/fpls.2017.00039.
• Cenci U, Bhattacharya D, Weber APM, Colleoni C, Subtil A, Ball SG (2017) Biotic host-pathogen interactions as major drivers of plastid endosymbiosis. Trends Plant Sci 22(4): 316-328. 
• Vollmer C, Weber APM, Wallenfang M, Hoffmann T, Mettler-Altmann T, Truse R, Bauer I, Picker O, Mathes AM (2017). Melatonin pretreatment improves gastric mucosal blood flow and maintains intestinal barrier function during hemorrhagic shock in dogs. Microcirculation, doi: 10.1111/micc.12345.
• Flores-Tornero M, Anoman AD, Rosa-Téllez S, Toujani W, Weber APM, Eisnehut M, Kurz S, Alseekh S, Fernie AR, Muñoz-Bertomeu J, Ros R (2017). Overexpression of the Triose Phosphate Translocator TPT complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. Plant J 89(6):1146-1158
• Lundquist PK, Mantegazza O, Stefanski A, Stühler K, Weber APM (2017) Surveying the Oligomeric State of Arabidopsis thaliana Chloroplasts. Mol Plant 10(1):197-211.
• Eisenhut M, Bräutigam A, Timm S, Florian A, Tohge T, Fernie A, Bauwe H, Weber APM (2016) Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered CO₂ availability. Mol Plant 10(1):47-61.
• Denton AK, Maß J, Kühlahoglu C, Lercher MJ, Bräutigam A, Weber APM (2017) Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. J Exp Bot 68(2):147-160.
• Schlueter U, Bräutigam A, Gowik U, Melzer M, Christin PA, Kurz S, Mettler-Altmann T, Weber APM (2016) Photosynthesis in C₃-C₄ intermediate Moricandia species. J Exp Bot 68(2):191-206.

• Xu J, Bräutigam A, Weber APM, Zhu XG (2016) Systems analysis of cis-regulatory motifs in C₄ photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation. J Exp Bot, 67(17):5105-17.
• Hussner A, Mettler-Altmann T, Weber APM, Sand-Jensen K (2016) Acclimation of photosynthesis to supersaturated CO₂ in aquatic plant bicarbonate users. Freshwater Biol, 61, 1720-1732.
• Ball SG, Bhattacharya D, Weber APM (2016) Infection and the first eukaryotes—Response. Science, 352: 1065-1066.
• Hagemann M, Weber APM, Eisenhut M (2016) Photorespiration: origins and metabolic integration in interacting compartments. J Exp Bot, 67 (10), 2915-2918.
• van Roermund CWT, Schroers MG, Wiese J, Facchinelli F, Kurz S, Wilkinson S, Charton L, Wanders RJA, Waterham HA, Weber APM, Linka N (2016) The peroxisomal NAD carrier from Arabidopsis imports NAD in exchange with AMP. Plant Physiol, 171(3):2127-39.
• Taniguchi M, Weber APM, von Caemmerer S (2016) Future Research into C4 Biology. Plant Cell Physiol, 57 (5):  879-880.
• Bhattacharya D, Agrawal S, Aranda M, Baumgarten S, Belcaid M, Drake J, Erwin D, Foret S, Gates R, Gruber D, Kamel B, Lesser M, Levy O, Liew YL, MacManes M, Mass T, Medina M, Mehr S, Meyer E, Price D, Putnam H, Qiu H, Shinto C, Shoguchi E, Stokes A, Tambutté S, Tchernov D, Voolstra C, Wagner N, Walker C, Weber APM, Weis V, Zelzion E, Zoccola D, Falkowski P (2016) Comparative genomics explains the evolutionary success of reef-forming corals. eLife, 5. pii: e13288. doi: 10.7554/eLife.13288.
• Beem F, Becker D, Larisch C, Kreuzer I, Escalante-Perez M, Schulze WX, Ankenbrand M, Keller AL, Krol E, Rasheid KA, Mithöfer A, Weber APM, Schulz J, Hedrich R (2016) Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. Genome Biol, 26(6):812-25.
• Hodges, M, Dellero Y, Keech O, Betti M, Raghavendra AS, Sage R, Zhu XG, Allen DK, Weber APM (2016) Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network. J Exp Bot, 67(10): 3015-26.
• Ball SG, Bhattacharya D, Qiu H, Weber APM (2016) Response: Commentary: Plastid establishment did not require a chlamydial partner. Front Cell Infect Microbiol, 6: 43. doi: 10.3389/fcimb.2016.00043.
• Schneider A, Steinberger I, Herdean A, Gandini C, Eisenhut M, Kurz S, Morper A, Hoecker N, Rühle T, Labs M, Flügge UI, Geimer S, Schmidt SB, Husted S, Weber APM, Spetea C, Leister D (2016) The evolutionarily conserved PHOTOSYNTHESIS AFFECTED MUTANT 71 of Arabidopsis is required for efficient manganese uptake at the thylakoid membrane. Plant Cell, 28(4): 892-910.
• Rademacher N, Kern R, Fujiwara T, Mettler-Altmann T, Miyagishima SY, Hagemann M, Eisenhut M, Weber APM (2016) Photorespiratory glycolate oxidase is essential for survival of the red alga Cyanidioschyzon merolae under ambient CO₂ conditions. J Exp Bot, 67(10): 3165-75. 
• Schuler MJ, Mantegazza O, Weber APM (2016) Engineering C₄ photosynthesis into C₃ chassis in the synthetic biology age. Plant J,  87(1):51-65.
• Betti M, Bauwe H, Busch FA, Fernie AR, Ketch O, Levey MPW, Ort DR, Parry MAJ, Sage R, Timm S, Walker B, Weber APM (2016) Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. J Exp Bot, 67(10): 2977-88.
• Hagemann M, Kern R, Maurino VG, Hanson DT, Weber APM, Sage RF, Bauwe H (2016) Evolution of photorespiration from cyanobacteria to land plants considering protein phylogenies and acquisition of carbon concentrating mechanisms. J Exp Bot, 67(10): 2963-76.
• Ball SG, Bhattacharya D, Weber APM (2016) Pathogen to powerhouse. How did the precursors to the mitochondrion and the plastid evade host defense? Science 351 (6274): 661-662.
• Schlueter U, Weber APM (2016) The road to C₄ photosynthesis: Evolution of a complex trait via intermediary states. Plant Cell Physiol, 57(5):881-9.
• Colinas M, Eisenhut M, Tohge T, Pesquera M, Fernie AR, Weber APM, Fitzpatrick TB (2016) Balancing of B6 vitamers is essential for plant development and metabolism in Arabidopsis. Plant Cell, 28(2): 439-53. 
• Brilhaus D, Bräutigam A, Mettler-Altmann T, Winter K, Weber APM (2016) Reversible Burst of Transcriptional Changes During Induction of Crassulacean Acid Metabolism (CAM) in Talinum triangulare. Plant Physiol 170(1): 102-122.

• vom Dorp K, Hölzl G, Plohmann C, Eisenhut M, Abraham M, Weber APM, Hanson AD, Dörmann P (2015) Remobilization of Phytol from Chlorophyll Degradation is Essential for Tocopherol Synthesis and Growth of Arabidopsis. Plant Cell 27(10):2846-2859. 
• Weber APM (2015) Discovering new biology through RNA-Seq. Plant Physiol 169(3):1524-1531.
• Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MAJ, Peralta-Yahya PP, Prince R, Redding KE, Spalding MH, van Wijk KJ, Vermaas WFJ, von Caemmerer S, Weber APM, Yeates TO, Yuan JS, Zhu XG (2015) Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proc Natl Acd Sci U S A 112(28):8529-8536.
• Karkar S, Facchinelli F, Price D, Weber APM, Bhattacharya D (2015) Metabolic connectivity as a driver of host and endosymbiont integration. Proc Natl Acad Sci U S A 112(33):10208-10215.
• Eisenhut M, Hocken N, Weber APM (2014) Plastidial metabolite transporters integrate photorespiration with carbon, nitrogen, and sulfur metabolism. Cell Calcium 58: 98-104.
• Pade N, Linka N, Wolfgang R, Weber APM, Hagemann M (2015) Floridoside and isofloridoside are synthesized by trehalose 6-phosphate synthase like enzymes in the red alga Galdieria sulphuraria. New Phytol 205(3):1227-1238.
• Facchinelli F, Weber APM (2015) Analysis of Cyanophora paradoxa tells important lessons on plastid evolution. Perspectives in Phycology 2 (1), 3-10.
• Jain K, Krause K, Grewe F, Nelson GF, Weber APM, Christensen ACC, Mower JP (2015) Extreme features of the Galdieria sulphuraria organellar genomes: a consequence of polyextremophily? Genome Biol Evol 7(1):367-80.

• van den Bergh E, Külahoglu C, Bräutigam A, Hibberd JM, Weber APM, Zhu XG, Schranz ME (2014) Gene and genome duplications and the origin of C₄ photosynthesis: Birth of a trait in the Cleomaceae. Curr Plant Biol, in press.
• Pick TR, Weber APM (2014) Unknown components of the plastidial permeome. Front Plant Sci 5: 410.
• Külahoglu C, Denton AK, Sommer M, Maß J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A, Weber APM (2014) Comparative transcriptome atlases reveal altered gene expression modules between two Cleomaceae C₃ and C₄ plant species. Plant Cell 26(8):3243-3260.
• Mallmann J, Heckmann D, Bräutigam A, Lercher MJ, Weber APM, Westhoff P, Gowik U (2014) The role of photorespiration during the evolution of C₄ photosynthesis in the genus Flaveria. eLife, 3. doi: 10.7554/eLife.02478.
• Pelletreau KN, Weber APM, Weber KL, Rumpho ME (2014) Lipid accumulation during the establishment of kleptoplasty in Elysia chlorotica. PLoS One 14(9): e97477.
• Nomura Y, Izumi A, Fukunaga Y, Kusumi K, Iba K, Watanabe S, Nakahira Y, Weber APM, Nozawa A, Tozawa Y (2014) Diversity in ppGpp Sensitivity Among Guanylate Kinases of Bacteria and Plants. J Biol Chem 289(22): 15631-15641.
• Staehr P, Löttgert T, Christmann A, Krueger S, Rosar C, Rolcik J, Novak O, Strnad M, Bell K, Weber APM, Flügge UI, Häusler RE (2014) Reticulate leaves and stunted roots are independent phenotypes pointing at opposite roles of the phosphoenolpyruvate/phosphate translocator defective in cue1 in the plastids of both organs. Frontiers Plant Sci 5: 126.
• Bhide A, Schliesky S, Reich M, Weber APM, Becker A (2014) Analysis of the floral transcriptome of Tarenaya hassleriana (Cleomaceae), a member of the sister group to the Brassicaceae: towards understanding the base of morphological diversity in Brassicales. BMC Plant Biol 15(1): 140.
• Bräutigam A, Schliesky S, Külahoglu C, Osborne C, Weber APM (2014) Towards an integrative model of C₄ photosynthetic subtypes – insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C₄ species. J Exp Bot 65(13):3579-3593.
• Wang Y, Bräutigam A, Weber APM, Zhu XG (2014) Three distinct biochemical subtypes of C₄ photosynthesis? A modeling analysis. J Exp Bot 65(13):3567-3578.
• Brouwer P, Bräutigam A, Külahoglu C, Tazelaar A, Kurz S, Nierop K, van der Werf A, Weber APM, Schluepmann H (2014) Azolla domestication towards a biobased economy? Transcriptome database and methods for dissemination, cross fertilization, and storage of Azolla fllliculoides. New Phytol 202(3): 1069-1082.
• Schönknecht G, Weber APM, Lercher MJ (2014) Horizontal Gene Acquisitions by Eukaryotes as Drivers of Adaptive Evolution. BioEssays 36(1): 9-20.
• Lundquist PK, Rosar C, Bräutigam A, Weber APM (2014) Plastid Signals and the Bundle Sheath: Mesophyll Development in Reticulate Mutants. Mol Plant 7(1):14-29.
• Lintala M, Schuck N,  Thormalen I,  Jungfer A, Weber KL,  Weber APM,  Geigenberger P, Soll J,  Bolter B,  Mulo P (2014) Arabidopsis tic62 trol mutant lacking thylakoid bound ferredoxin-NADP+ oxidoreductase shows distinct metabolic phenotype. Mol Plant 7(1):45-57.

• Facchinelli F, Colleoni C, Ball SG, Weber APM (2013) Chlamydia, cyanobiont, or host: who was on top in the ménage à trois? Trends Plant Sci 18: 673-679.
• Qui H, Price DC, Weber APM, Facchinelli F, Yoon HS, Bhattacharya D (2013) Assessing the bacterial contribution to the plastid proteome. Trends Plants Sci 18: 680-687.
• Qui H, Price DC, Weber APM, Reeb V, Yang EC, Kim SY, Lee JM, Yoon HS, Bhattacharya D (2013) Adaptation through horizontal gene transfer in the cryptoendolithic red alga Galdieria phlegrea. Curr Biol 23(19):R865-R866.
• Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Külahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber APM, Shi C, Zheng Z, Li W, Lv M, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz E (2013) The genome of Tarenaya hassleriana provides insights into reproductive trait and genome evolution of crucifers. Plant Cell (8):2813-30.
• Schlüter U, Colmsee C, Scholz U, Bräutigam A, Weber APM, Zellerhoff N, Bucher M, Fahnenstich H, Sonnewald U (2013) Adaptation of maize source leaf metabolism to stress related disturbances in carbon, nitrogen and phosphorus balance. BMC Genomics 4: 442.
• Bhattacharya D, Price DC, Chan XC, Qiu H, Rose N, Ball S, Weber APM, Arias MC, Henrissat B, Coutinho PM, Krishnan A, Zäuner S, Morath S, Hilliou F, Egizi A, Perrineau MM, Yoon HS (2013) Genome of the red alga Porphyridium purpureum. Nat Commun 4: 1941.
• Heckmann D, Schulze S, Denton A, Gowik U, Westhoff P, Weber APM, Lercher MJ (2013) Predicting C₄ photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape. Cell 153: 1579-1588.
• Mortimer JC, Yu X, Albrecht S, Sicilia F, Huichalaf M, Ampuero D, Michaelson LV, Murphy AM, Matsunga T, Kurz S, Stephens E, Baldwin T, Ishii T, Napier J, Weber APM, Handford MG, Dupree P (2013) Abnormal glycosphingolipid mannosylation triggers salicylic-acid mediated responses in Arabidopsis. Plant Cell 25(5): 1881-1894.
• Kuhn A, Engqvist MK, Jansen EE, Weber APM, Jakobs C, Maurino VG (2013) D-2-hydroxyglutarate metabolism is linked to photorespiration in the shm1-1 mutant. Plant Biol 15(4): 776-784.
• Weber APM, Bauwe H (2013) Photorespiration – a driver for evolutionary innovations and key to better crops. Plant Biol 15(4): 621-623.
• Manandhar-Shrestha K, Tamot B, Pratt EPS, Saitie S, Bräutigam A, Weber APM, Hoffmann-Benning S (2013) Comparative proteomics of chloroplast envelopes from bundle sheath and mesophyll chloroplasts reveal novel membrane proteins with a possible role in C₄-related metabolite fluxes and development. Frontiers Plant Sci 4: 65.
• Bordych C, Eisenhut M, Pick TR, Kuelahoglu C, Weber APM (2013) Co-expression analysis as a tool for the discovery of transport proteins in photorespiration. Plant Biol 15(4): 686-693.
• Denton AK, Simon R, Weber APM (2013) C₄ photosynthesis: from evolutionary analyses to synthetic reconstruction of the trait. Curr Opin Plant Biol 6(3): 315-321.
• Harter K, Weber APM (2013) Arabidopsis 2010 and beyond - big science with a small weed. Frontiers Plant Sci 4: 18.
• Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber APM (2013) Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science 339(6124):1207-1210.
• Pick TR, Bräutigam A, Schulz M, Obata T, Fernie AR, Weber APM (2013) PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a new class of metabolite transporters. Proc. Natl. Acad. Sci. U S A 110(8):3185-90.
• Rudolf M, Machettira AB, Groß LE, Weber KL, Bolte K, Bionda T, Sommer MS, Maier UG, Weber AP, Schleiff E, Tripp J (2013) In Vivo Function of Tic22, a Protein Import Component of the Intermembrane Space of Chloroplasts. Molecular Plant 6(3):817-29.
• Fernie AR, Bauwe H, Eisenhut M, Florian A, Hanson DT, Hagemann M, Keech O, Mielewczik M, Nikoloski Z, Peterhänsel C, Roje S, Sage R, Timm S, von Caemmerer S, Weber APM, Westhoff P (2013) Perspectives on photorespiratory metabolism. Plant Biol 15(4): 748-753.
• Ball SG, Subtil A, Bhattacharya D, Moustafa A, Weber APM, Gehre L, Colleoni C, Arias MC, Cenci U, Dauvillé D (2013) Metabolic effectors secreted by bacterial pathogens: essential facilitators of plastid endosymbiosis? Plant Cell 25(1):7-21.
• Kern R, Eisenhut M, Bauwe H, Weber APM, Hagemann M (2013) Does the Cyanophora paradoxa genome revise our view on the evolution of photorespiratory enzymes? Plant Biol 15(4): 759-768.
• Facchinelli F, Pribil M, Oster U, Ebert NJ, Bhattacharya D, Leister D, Weber APM (2013) Proteomic analysis of the Cyanophora paradoxa muroplast provides clues on early events in plastid endosymbiosis. Planta 237(2):637-651.
• Hagemann M, Fernie AR, Espie GS, Kern R, Eisenhut M, Reumann S, Bauwe H, Weber APM (2013). Evolution of the biochemistry of the photorespiratory C2 cycle. Plant Biol 15(4): 639-647.
• Eisenhut M, Pick TR, Bordych C, Weber APM (2013) Towards closing the remaining gaps in photorespiration - the essential but unexplored role of transport proteins. Plant Biol 15(4): 676-685.
• Weber APM, Bräutigam A (2013) The role of membrane transport in metabolic engineering of plant primary metabolism. Curr Opin Biotechnol 24(2): 256-262.
• Eisenhut M, Planchais S, Cabassa C, Guivarc'h A, Justin AM, Taconnat L, Renou JP, Linka M, Gagneul D, Timm S, Bauwe H, Carol P, Weber APM (2013) Arabidopsis A BOUT DE SOUFFLE is a putative mitochondrial transporter involved in photorespiratory metabolism and is required for meristem growth at ambient CO₂ levels. Plant J 73(5):836-849.
• Maurino VG, Weber APM (2013) Engineering photosynthesis in plants and synthetic microorganisms. J Exp Bot 64: 743-751.

• Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick TR, Alter P, Gahrtz M, Witt S, Fernie AR, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber APM, Schreiber F, Scholz U, Sonnewald U (2012) OPTIMAS-DW: A Comprehensive Transcriptomics, Metabolomics, Ionomics, Proteomics and Phenomics Data Resource for Maize. BMC Plant Biol 12: 245.
• Schliesky S, Gowik U, Weber APM, Bräutigam A (2012) RNA-seq assembly - Are we there yet? Frontiers Plant Sci 3: 220.
• Schulze WX, Sanggaard KW, Kreuzer I, Knudsen AD, Bemm F, Thorgersen IB, Bräutigam A, Thomsen LR, Schliesky S, Dyrlund DF, Escalante-Perez M, Becker D, Schultz J, Karring H, Weber A, Hojrup P, Hedrich R, Enghild JJ (2012) The protein composition of the digestive fluid from the Venus flytrap sheds light on prey digestion mechanisms. Mol Cell Proteomics 11: 1306-1319.
• Hamisch D, Randewig D, Schliesky S, Bräutigam A, Weber APM, Geffer R, Herschbach C, Rennenberg H, Mendel RR, Hänsch R (2012) Impact of SO₂ on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knock-out plants by RNA deep sequencing. New Phytol 196: 1074-1085.
• Bräutigam A, Facchinelli F, Weber APM (2012) Metabolic integration of the chloroplast during endosymbiosis - molecular characterization of envelope transport proteins. Endocytobiosis Cell Res 23: 96-102.
• Facchinelli F, Bräutigam A, Weber APM (2012) Metabolic integration of the chloroplast during endosymbiosis. Endocytobiosis Cell Res 23: 52-55.
• Hibberd JM, Weber APM (2012) Plant metabolism and physiology. Curr Opin Plant Biol 15: 1-3.
• Göhre V, Jones AME, Sklenar J, Robatzek S, Weber APM (2012) Molecular crosstalk between PAMP-triggered immunity and photosynthesis. Mol Plant Microbe Interact 25: 1083-1092.
• Rosar C, Kanonenberg K, Nanda AM, Mielewczik M, Bräutigam A, Novák O, Strnad M, Walter A, Weber APM (2012) The leaf reticulate mutant dov1 is impaired in the first step of purine metabolism. Mol Plant 5: 1227-1241.
• Bernhardt K, Vigelius SK, Wiese J, Linka N, Weber APM (2012) Agrobacterium-mediated Arabidopsis thaliana transformation: an overview of T-DNA binary vectors, floral dip and screening for homozygous lines. Endocytobiosis Cell Res 22: 19-28.
• Voll LM, Zell, MB, Engelsdorf T, Saur A, Gerrard Wheeler M, Drincovich MF, Weber APM, Maurino VG (2012) Loss of cytosolic NADP-malic enzyme 2 in Arabidopsis is associated with enhanced susceptibility towards Colletotrichum higginsianum. New Phytol 195: 189-202.
• Maier A, Fahnenstich H, von Caemmerer S, Engqvist MKM, Weber APM, Flügge UI, Maurino VG (2012) Glycolate oxidation in A. thaliana chloroplasts improves biomass production. Frontiers Plant Sci 3: 38.
• Gu J, Weber KL, Klemp E, Winters G, Franssen SU, Wienpahl I, Huylmans AK, Zecher K, Reusch TBH, Bornberg-Bauer E, Weber APM (2012) Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation as a feature for systems robustness. Integr Biol 4: 480-493.
• Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber APM, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JAD, Lang BF, Burger G, Steiner JM, Löffelhardt W, Meuser JE, Posewitz MC, Ball S, Arias MC, Henrissat B, Coutinho BM, Rensing SA, Symeonidi A, Doddapaneni H, Green BR, Rajah VD, Boore J, Bhattacharya D (2012) Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science 335: 843-847.
• Breuers FKH, Braeutigam A, Geimer S, Welzel UY, Stefano G, Renna L, Brandizzi F,  Weber APM (2012) Dynamic remodeling of the plastid envelope membranes – a tool for chloroplast envelope in vivo localizations, Frontiers Plant Sci 3: 7.
• Sommer M, Bräutigam A, Weber APM (2012) The dicotyledonous NAD-malic enzyme C₄ plant Cleome gynandra displays age-dependent plasticity of C₄ decarboxylation biochemistry. Plant Biol 14: 621-629.
• Bernhardt K, Wilkinson S, Weber APM, Linka N (2012) A peroxisomal carrier delivers NAD⁺ and contributes for optimal fatty acid degradation during storage oil mobilisation. Plant J 68: 1-13.

• Breuers FKH, Bräutigam A, Weber APM (2011) The plastid outer envelope - a highly dynamic interface between plastid and cytoplasm.Front Plant Sci 2: 97
• Pick TR, Bräutigam A, Schlüter U, Denton A, Colmsee C, Scholz U, Fahnenstich H, Pieruschka H, Rascher U, Sonnewald U, Weber APM (2011). Systems analysis of a maize leaf developmental gradient redefines the current C₄ model and provides candidates for regulation. Plant Cell 23: 4208-4220.
• Facchinelli F, Weber APM (2011) The metabolite transporters of the plastid envelope: an update. Front Plant Sci 2:50
• Furumoto T, Yamaguchi T, Ohshima-Ichie Y, Nakamura M, Tsuchida-Iwata Y, Shimamura M, Ohnishi J, Hata S, Gowik U, Westhoff P, Bräutigam A, Weber APM, Izui K (2011) A plastidial sodium-dependent pyruvate transporter. Nature 476: 472-475
  (Must Read, Faculty of 1000)
• Gowik U, Bräutigam A, Weber KL, Weber APM, Westhoff P (2011) Evolution of C₄ photosynthesis in the genus Flaveria – how many and which genes does it take to make C₄? Plant Cell 23: 2087-2105
• Franssen SU, Shrestha RP, Bräutigam A, Bornberg-Bauer E, Weber APM (2011) Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. BMC Genomics 12:227.
• Osteryoung KW, Weber APM (2011) Plastid Biology: Focus on the Defining Organelle of Plants. Plant Physiol 155: 1475-1476.
• Maruyama S, Suzaki T, Weber APM, Archibald JM, Nozaki H (2011) Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids. BMC Evol Biol 11: 105
• Engqvist MKM, Kuhn A, Wienstroer J, Weber KL, Jansen EEW, Jakobs C, Weber APM, Maurino VG (2011) Plant D-2-hydroxyglutarate dehydrogenase  participates in the catabolism of lysine especially during senescence. J Biol Chem 286(13): 11382-11390
• Weber APM, Linka N (2011) Connecting the plastid - transporters of the plastid envelope and their role in linking plastidial with cytosolic metabolism. Annu Rev Plant Biol 62: 53-77
• Bräutigam A, Mullick T, Schliesky S, Weber APM (2011) Critical assessment of assembly strategies for non-model species  mRNA-Seq data and application of next-generation sequencing to the comparison of C3 and C4 species. J Exp Bot 62(9): 3093-3102
• Bräutigam A, Weber APM (2011) Do transport process limit photosynthesis? Plant Physiol 155(1): 43-48
• Kinoshita H, Nagasaki J, Yoshikawa N, Yamamoto A, Takito S, Kawasaki M, Sugiyama T, Miyake H, Weber APM, Taniguchi M (2011) The chloroplastic 2-oxoglutarate/malate transporter has dual function as the malate valve and in carbon/nitrogen metabolism. Plant J 65(1): 15-26. (Recommended by Faculty of 1000)
• Bräutigam A, Kajala K, Wullenweber J, Sommer M, Gagneul D, Weber KL, Carr KM, Gowik U, Maß J, Lercher MJ, Westhoff P, Hibberd JM, Weber APM (2011) An mRNA blueprint for C₄ photosynthesis derived from comparative transcriptomics of closely related C₃ and C₄ species. Plant Physiol 155(1): 142-156

• Minoda A, Weber AP, Tanaka K, Miyagishima SY (2010) Nucleus-independent control of the Rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae. Plant Physiol 154(3): 1532-1540.
• Weber APM, Osteryoung KW (2010) From endosymbiosis to synthetic photosynthetic life. Plant Physiol 154: 593-597.
• Colleoni C, Linka M, Deschamps P, Handford MG, Dupree P, Weber APM, Ball SG (2010) Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis. Mol Biol Evol 27(12): 2691-2701.
• Thagaraj B, Ryan CM, Souda P, Krause K, Faull KF, Weber APM, Fromme P, Whitelegge JP (2010) Data-directed top-down Fourier-transform mass spectrometry of a large integral membrane protein complex, Photosystem II from Galdieria sulphuraria. Proteomics 10(20): 3644-3656.
• Imamura S, Terashita M, Ohnuma M, Maruyama S, Minoda A, Weber APM, Inouye T, Sekine Y, Fujita Y, Omata T, Tanaka K (2010)  Nitrate Assimilatory Genes and Their Transcriptional Regulation in a Unicellular Red Alga Cyanidioschyzon merolae: Genetic Evidence for Nitrite Reduction by a Sulfite Reductase-like Enzyme. Plant Cell Physiol 51(5): 707-717.
• Weber APM, von Caemmerer S (2010) Plastid transport and metabolism of C₃ and C₄ plants - comparative analysis and possible biotechnological exploitation. Curr Opin Plant Biol 13: 257-265.
• Lim L, Linka M, Weber APM, McFadden GI (2010) The carbon and energy sources of the non-photosynthetic plastid in the malaria parasite. FEBS Lett 584(3): 549-554.
• Linka N, Weber APM (2010). Intracellular metabolite transporters in plants. Mol Plant 3(1): 21-53.
• Reyes F, Leon G, Donoso M, Brandizzi F, Weber APM, Orellana A (2010) The nucleotide sugar transporters AtUTr1 and AtUTr3 are required for the incorporation of UDP-glucose into the endoplasmic reticulum and are essential for pollen development and needed for embryo sac progress in Arabidopsis thaliana. Plant J 61(3): 423-435.

• Benz JP, Stengel A, Lintala M, Lee Y-H, Weber APM, Philippar K, Gugel IL, Kaieda S, Ikegami T, Mulo P, Soll J, Bolter B (2009) Tic62 and FNR form light-regulated complexes that are integrated into the chloroplast redox poise. Plant Cell 21(12): 3965-3983.
• Bräutigam A, Weber APM (2009). Proteomic Analysis of the Proplastid Envelope Membrane Provides Novel Insights into Small Molecule and Protein Transport across Proplastid Membranes. Mol Plant 2(6): 1247-1261.
• Reumann S, Quan S, Aung K, Yang P, Manandhar-Shrestha K, Holbrook D, Linka N, Switzenberg R, Wilkerson CG, Weber APM, Olsen LJ, Hu J (2009). In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Plant Physiol 150(1):125-143.
• Jamai A, Salomé PA, Schilling SH, Weber APM, McClung CR (2009) Arabidopsis Photorespiratory Serine Hydroxymethyltransferase (SHMT) Activity Requires The Mitochondrial Accumulation Of Ferredoxin-Dependent Glutamate Synthase (Fd-GOGAT). Plant Cell 21(2):125-143.
• Vanselow C, Krause K, Weber APM, Fromme P (2009) Genetic Analysis of the Photosystem I Subunits from the red alga, Galdieria sulphuraria. Biochim Biophys Acta 1787(1):46-59.
• McCoy JG, Bailey LJ, Ng YH, Bingman CA, Wrobel R, Weber APM, Fox B, Phillips GN Jr (2009) Discovery of Sarcosine Dimethylglycine Methyltransferase from Galdieria sulphuraria. Proteins 74(2):368-77.

• Linka N, Theodoulou FL, Haslam RP, Napier JA, Neuhaus HE, Weber APM (2008) Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. Plant Cell 20(12): 3241-3257. (Recommended by Faculty of 1000)
• Linka M, Jamai A, Weber APM (2008) Functional characterization of the plastidic phosphate translocator gene family from the thermo-acidophilic red alga Galdieria sulphuraria reveals specific adaptations of primary carbon partitioning in green plants and red algae. Plant Physiol 148: 1487-1496.
• Bräutigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber APM (2008) Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: Comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes. J Biotechnol 138: 44-53.
• Bräutigam A, Hoffmann-Benning S, Weber APM (2008) Comparative proteomics of chloroplasts envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes. Plant Physiol 148: 568-579.
• Lu Y, Savage LJ, Ajjawi I, Imre KM, Yoder DW, Benning C, Dellapenna D, Ohlrogge JB, Osteryoung KW, Weber AP, Wilkerson CG, Last RL (2008) New Connections Across Pathways and Cellular Processes: Industrialized Mutant Screening Reveals Novel Associations between Diverse Phenotypes in Arabidopsis. Plant Physiol 146: 1482-1500.
• Oesterhelt, C., Vogelbein, S., Shrestha, R.P., Stanke, M., Weber, A.P.M. (2008) The genome of the thermoacidophilic red microalga Galdieria sulphuraria encodes a small family of secreted class III peroxidases that might be involved in cell wall modification. Planta 227: 353-362.

• 34. Reumann S., Weber A.P.M. (2006) Plant peroxisomes respire in the light: Some gaps of the photorespiratory C2 cycle have become filled - others remain. Biochim Biophys Acta, 1763, 1496-1510.
• 33. Bouvier F., Linka N., Isner J.C., Mutterer J., Weber A.P.M., Camara B. (2006) Arabidopsis SAMT1 Defines a Plastid Transporter Regulating Plastid Biogenesis and Plant Development Plant Cell, 18, 3088-3105.
• 32. Weber, A.P.M., Linka, M., Bhattacharya, D. (2006). Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor. Eukaryot. Cell 5: 609-12. (Recommended by Faculty of 1000)   (click here for free full text)
• 31. Voll, L.M., Jamai, A., Renné, P., Voll, H., McClung, C.R., Weber, A.P.M. (2006). The photorespiratory Arabidopsis thaliana mutant shm is deficient in SHM1. Plant Physiol. 140: 59-66. (click here for free full text)
• 30.Schneidereit, J., Häusler, R.E., Fiene, G., Kaiser, W.M., Weber, A.P.M. (2006). Antisense repression reveals a crucial role of the plastidic 2-oxoglutarate/malate translocator DiT1 at the interface between carbon and nitrogen metabolism. Plant J. 45: 206-224.

• 20.Renné, P., Dreßen, U., Hebbeker, U., Hille, D., Flügge, U.I., Westhoff, P. & Weber, A.P.M. (2003). The Arabidopsis mutant dct is deficient in the plastidic dicarboxylate/malate translocator DiT2. Plant J. 35 (3): 316-331.
• 19. Voll, L., Häusler, R.E., Hecker, R., Weber, A., Weissenböck, G., Fiene, G., Waffenschmidt, S. & Flügge, U.I. (2003). The phenotype of the Arabidopsis cue1 mutant is not simply caused by a general restriction of the shikimate pathway. Rescue of the cue1 phenotype by overexpression of a phosphoenolpyruvate/phosphate translocator or a plastidic pyruvate, orthophosphate dikinase and metabolic consequences. Plant J., 36 (3): 301-317.